Playing through again, took the opposite mission path. I'm on the mission where you fly the Ashur.
I originally had a long, epic rant on the capship's controls here, but complaining is not really what I want to do... I just want some help.
Basically, how do you control the Ashur's weapons? No matter what I do, they are always set to "automatic targetting" and half of them don't seem to be firing. Pulling the primary trigger does nothing. Targetting a different enemy does nothing. The Thermal Lance shoots at whatever it feels like (which is, thankfully, usually the biggest enemy ship on the battlefield). Forget the other weapons: they only fire intermittently... I've only managed to make the beams fire ONCE, and I don't know why.
Running 3.6.16, if that matters. It's the first build I've seen that actually doesn't throw a dozen or so error/warnings when it starts up this mod.